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Evaluation Methods for Inference-Time Retrieval-Augmented and Graph Retrieval-Augmented Large Language Models in Health Care: Scoping Review

Zhao Y, Miao Y, Guo R, Luo Y, Wang H, Wu Y

Journal of medical Internet research, 2026

Abstract

Abstract Background Inference-time retrieval augmentation is increasingly used to improve the traceability and verifiability of large language model (LLM) applications in health care. Evaluation practices for text-based retrieval-augmented generation (RAG) and graph-structured RAG (GraphRAG) systems remain heterogeneous, which limits comparison across studies and complicates judgments about clinical readiness. Objective This review mapped evaluation methods for inference-time retrieval-augmented and graph-structured retrieval-augmented LLM systems in health care and characterized how evaluation constructs are defined, operationalized, and reported across system layers and evaluation-setting categories. Methods We conducted a scoping review in accordance with PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews), with search reporting informed by PRISMA-S (PRISMA literature search extension). Searches were conducted through May 14, 2026, in PubMed (MEDLINE), Web of Science Core Collection, IEEE Xplore, ACM Digital Library, arXiv, and medRxiv, with backward and forward citation tracking of included studies. Eligible records described health care–relevant LLM systems using inference-time RAG and reported at least 1 evaluation component. Data were charted on study characteristics, system design, retrieval-layer evaluation, evidence linkage, safety-related and GraphRAG-specific evaluation, and selected reporting and…

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