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Diversity-Aware Document Retrieval using Retrieval-Augmented Generation

Yuanting Liu

Uppsala University Publications (Uppsala University), 2026

Abstract

Retrieval-Augmented Generation (RAG) systems rely on retrieved context to support grounded answer generation. However, standard nearest-neighbor retrieval may return chunks that are individually relevant to a query but collectively redundant or concentrated in a small number of source documents. This can limit evidence coverage and reduce the effective use of the language model's context budget, especially when retrieval is performed over long scientific documents. This thesis develops and evaluates a document-based RAG pipeline with a focus on diversity-aware retrieval. The pipeline uses a two-stage structure: Stage 1 retrieves candidate documents, and Stage 2 selects fine-grained body chunks as evidence for answer generation. For Stage 1, the thesis compares direct document representation retrieval with front-chunk aggregation. For Stage 2, it compares Relevance-Only Dense Retrieval with two diversity-aware selection strategies: Jaccard-Based Lexical Diversity Reranking and Embedding-Space Diverse Neighbor Selection. The system is evaluated on a corpus of scientific PDF documents using automatic proxy evaluation, manually written conceptual queries, retrieval-side context indicators, LLM-based context judging, and qualitative answer examples. The Stage 1 results show that direct document representation provides comparable candidate recall with lower retrieval time, while front-chunk aggregation can promote documents with stronger field-level matches. The Stage 2 results…

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