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Molecular-Genetic and In Silico 3D Characterization of an Adamantinomatous Craniopharyngioma, the ‘Chameleon’ Among Pediatric Brain Tumors

Eugen‐Matthias Strehle, Belqees Faiz, Colin Saysell, Marina Pitsika, Neil Hopper, Julia Russell, Rachel Boal, Massimiliano Perduca et al.

Preprints.org, 2026

Abstract

Background: Adamantinomatous craniopharyngiomas (ACPs) are congenital brain tumors that affect children and adults. Due to their location within the brain and their adhesion to surrounding structures they are difficult to treat. They are commonly associated with pituitary and hypothalamic dysfunction. The aim of this report is a detailed phenotypic and genotypic evaluation of a girl with ACP. Methods: Laboratory blood tests and magnetic resonance imaging (MRI) were performed. Histopathological investigations included staining with hematoxylin and eosin (H&E), and various antibodies. Genetics and bioinformatics tests comprised single nucleotide polymorphism (SNP) array, deoxyribonucleic acid (DNA) methylation array, next generation sequencing (NGS) and structural modelling of beta-catenin. Results: An 8.5-year-old girl presented to her general practitioner with gastrointestinal symptoms and was comprehensively investigated by a paediatric gastroenterologist. During the following 1.5 years she showed traits of sensory processing disorder and complained of mild headaches. Brain imaging revealed an adamantinomatous craniopharyngioma which was incompletely resected. Sequencing of the CTNNB1 gene demonstrated a tumorigenic variant, c.98C>G p.(Ser33Cys). Three-dimensional modeling of the Ser33Cys beta-catenin variant indicated a weaker interaction with β‑TrCP1 (β-transducin repeat containing E3 ubiquitin protein ligase 1), due to the impossibility to undergo phosphorylation at…

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