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In Silico Evaluation of Mechanobiological Parameters Under Variable Flow in Three-Dimensional Microfluidic Platforms Supporting Future Cell Migration Studies

Munoz JM, Valle NME, Liu CM, Alves AH, Pileggi GF, Mamani JB, Costa MF, Silva KFD et al.

Biomedicines, 2026

Abstract

Background: Cell migration is a biological process influenced by biochemical signals and mechanical stimuli from the microenvironment. In this context, the accurate characterization of the mechanical microenvironment generated within microfluidic platforms represents an essential step for the design and interpretation of cell migration studies. Understanding how hydrodynamic forces influence the mechanical microenvironment experienced by cells remains a challenge, especially in confined and biomimetic systems. Methods: In this study, a three-dimensional microfluidic device was developed in silico to characterize the effects of flow variation on mechanofluidic parameters and to provide a quantitative basis for designing future cell-migration experiments. Computational fluid dynamics simulations were performed to characterize the velocity, pressure, and wall shear stress (WSS) distributions under different inlet flow rates (0.5, 1, and 5 µL/min) and three distinct inlet/outlet configurations within the same three-dimensional geometry. Rigid hemispherical probe structures were incorporated into the model to quantify the local shear stress acting on cell-sized surfaces. Results: The results demonstrated a direct and linear relationship between the applied flow rate and the WSS, modulated by the channel geometry and the inlet and outlet configuration. Regions near micropores and lateral channels showed high WSS values, while central regions experienced less mechanical…

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