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Emerging pathogens in urinary tract infections: virulence and phenotypic characterization of Pseudomonas aeruginosa strains

Rachel C. Fleck, Olena Gorodyna, Hao Zhou, Hannah Bryant, Mihaela G. Gadjeva, Allyson E. Shea

bioRxiv (Cold Spring Harbor Laboratory), 2026

Abstract

Urinary tract infections (UTIs) affect a broad patient population and inflict a substantial financial burden on the U.S. healthcare system. While uropathogenic Escherichia coli (UPEC) causes the majority of cases, other pathogens are emerging. Patient data from our healthcare system in the Gulf Coast region of Alabama revealed that Pseudomonas aeruginosa accounted for 4.0% of UTI cases, roughly double the national average, prompting further investigation into this historically understudied uropathogen. Here, we performed whole-genome sequencing and phenotypic assays on 55 urinary P. aeruginosa isolates to characterize genomic diversity, antibiotic resistance, and virulence-associated phenotypes in the context of UTI. Multilocus sequence typing identified 19 strains with novel sequence types, underscoring the uncharacterized diversity of urinary P. aeruginosa isolates. Serotype O6 was most common and enriched in patients with indwelling catheters, whereas O4 was linked to diabetes mellitus. Antibiotic susceptibility testing (AST) revealed high levofloxacin resistance (29.1%), with 14.5% multidrug-resistant (MDR) and 9.1% extensively drug-resistant (XDR) isolates. Resistance patterns correlated with demographics, including higher meropenem and aztreonam resistance among isolates from African American patients. Phenotypic assays of growth, motility, and biofilm formation revealed negative correlations between antibiotic resistance and virulence. Specific virulence genes…

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