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The gut microbiome in pediatric diffuse midline gliomas: Correlative study results from the PNOC022 trial

R. Hoogendijk, C. Kline, Andrea T. Franson, Jessica Clymer, L. Kilburn, Nicolas U. Gerber, Kenneth J. Cohen, M. Yalon et al.

Journal of Clinical Oncology, 2025

42 participants

Abstract

10015

Background:

The gut microbiome exerts a multifaceted influence on treatment outcomes across various cancers, yet its potential role in diffuse midline gliomas (DMGs) remains under-explored. In this report, we present the gut microbiome findings from cohort 2 in the DMG–Adaptive Combination Trial (DMG-ACT, PNOC022).

Methods:

PNOC022 is an open-label, multi-institutional, international clinical trial using a Bayesian drug combination platform trial design. This report focuses on the combination therapy arm involving dordaviprone and paxalisib, administered to patients (aged 2–39 years) who had completed standard-of-care radiation therapy (Cohort 2). Stool samples were collected at baseline (n = 22), cycle 1 day 1 (n = 15), cycle 7 day 1 (n = 9), and at progression (n = 4). Microbiome profiling was performed with shotgun metagenomic sequencing (NovaSeq X Plus Series, PE150). Progression-free survival (PFS) and overall survival (OS) were analyzed using the Kaplan-Meier method. Longitudinal shifts in microbial communities were evaluated using α-diversity (Shannon-index) and β-diversity (Bray-Curtis dissimilarity index). Baseline α-diversity associations with PFS and OS were examined with log-rank tests and further validated through age-adjusted Cox regression analysis.

Results:

Between November 2021 and October 2023, 69 biopsy-confirmed DMG patients enrolled (median age 9 years [range 3-37], n = 42 female [61%]) in cohort 2. Median OS from time of diagnosis was 15.6 months…

How strong is the evidence?

Evidence Hub reads this as a cohort study, done in people. Its evidence level is 3 of 5 (Moderate · trial / cohort / secondary analysis). Trials without a large randomized design, cohorts and secondary analyses give moderate evidence. Reported size: 42 participants or records.

How the five levels of evidence work. The level is assigned automatically from the abstract and can be wrong, so check the paper.

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