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Probing the Histamine H1 Receptor Binding Site to Explore Ligand Binding Kinetics

Kuhne S, Bosma R, Kooistra AJ, Riemens R, Stroet MCM, Vischer HF, de Graaf C, Wijtmans M et al.

Journal of medicinal chemistry, 2025

4 citations

Abstract

High Resolution Image Download MS PowerPoint Slide Analysis of structure-kinetic relationships (SKR) can contribute to an improved understanding of receptor–ligand interactions. Here, fragment 1 (4-(2-benzylphenoxy)-1-methylpiperidine) was used in different fragment growing approaches to mimic the putative binding mode of the long residence time (RT) ligands olopatadine, acrivastine, and levocetirizine at the histamine H 1 receptor (H 1 R). SKR analyses reveal that introduction of a carboxylic acid moiety can increase RT at H 1 R up to 11-fold. Ligand efficiency (LE) decreases upon the introduction of the negatively charged group, whereas kinetic efficiency (KE) increases up to 8.5-fold. The olopatadine/acrivastine mimics give up to 15-fold differences in the RT, while the levocetirizine mimics afford similar RTs with only a 3-fold difference. Therefore, the levocetirizine mimics are less sensitive to structural changes. This study illustrates that for H 1 R, there are several ways to increase RT but the different strategies differ significantly in SKR.

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